The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

finalsize: Calculate the Final Size of an Epidemic

Calculate the final size of a susceptible-infectious-recovered epidemic in a population with demographic variation in contact patterns and susceptibility to disease, as discussed in Miller (2012) <doi:10.1007/s11538-012-9749-6>.

Version: 0.2.1
Depends: R (≥ 2.10)
Imports: checkmate, Rcpp
LinkingTo: Rcpp, RcppEigen
Suggests: bookdown, colorspace, dplyr, forcats, ggplot2, ggtext, knitr, purrr, rmarkdown, scales, socialmixr, spelling, testthat (≥ 3.0.0), tibble, tidyr, xml2
Published: 2024-04-09
DOI: 10.32614/CRAN.package.finalsize
Author: Pratik Gupte ORCID iD [aut, cre, cph], Edwin Van Leeuwen ORCID iD [aut, cph], Adam Kucharski ORCID iD [aut, cph], Rosalind Eggo ORCID iD [ctb], Hugo Gruson ORCID iD [ctb], Thibaut Jombart ORCID iD [ctb], Andree Valle-Campos ORCID iD [ctb], Joshua W. Lambert ORCID iD [rev]
Maintainer: Pratik Gupte <pratik.gupte at lshtm.ac.uk>
BugReports: https://github.com/epiverse-trace/finalsize/issues
License: MIT + file LICENSE
URL: https://github.com/epiverse-trace/finalsize, https://epiverse-trace.github.io/finalsize/
NeedsCompilation: yes
Language: en-GB
Materials: README NEWS
In views: Epidemiology
CRAN checks: finalsize results

Documentation:

Reference manual: finalsize.pdf
Vignettes: Comparison with a compartmental model
Projecting re-emergence risk after waning or new births
Calculating the final size of an epidemic
Guide to constructing susceptibility matrices
Theoretical background
Modelling uncertainty in R₀
Modelling heterogeneous social contacts
Modelling heterogeneous susceptibility

Downloads:

Package source: finalsize_0.2.1.tar.gz
Windows binaries: r-devel: finalsize_0.2.1.zip, r-release: finalsize_0.2.1.zip, r-oldrel: finalsize_0.2.1.zip
macOS binaries: r-release (arm64): finalsize_0.2.1.tgz, r-oldrel (arm64): finalsize_0.2.1.tgz, r-release (x86_64): finalsize_0.2.1.tgz, r-oldrel (x86_64): finalsize_0.2.1.tgz
Old sources: finalsize archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=finalsize to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.