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This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.
| Version: | 0.2 |
| Depends: | R (≥ 3.0.1) |
| Published: | 2016-04-21 |
| DOI: | 10.32614/CRAN.package.falcon |
| Author: | Hao Chen and Nancy R. Zhang |
| Maintainer: | Hao Chen <hxchen at ucdavis.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | falcon results |
| Reference manual: | falcon.pdf |
| Package source: | falcon_0.2.tar.gz |
| Windows binaries: | r-devel: falcon_0.2.zip, r-release: falcon_0.2.zip, r-oldrel: falcon_0.2.zip |
| macOS binaries: | r-release (arm64): falcon_0.2.tgz, r-oldrel (arm64): falcon_0.2.tgz, r-release (x86_64): falcon_0.2.tgz, r-oldrel (x86_64): falcon_0.2.tgz |
| Old sources: | falcon archive |
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