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eyeris 1.2.0
✨ New features
- NF: Add vertical lines to plots to indicate where missing data (such
as blinks and/or removed artifacts) are located in the time series
- ENH: Plotting now takes time ranges in seconds directly and does the
conversion to row index using tracker Hz on the backend, making plotting
in
eyeris more intuitive. To demonstrate:
plot(eyeris_preproc,
steps = c(1, 5),
preview_window = c(0, max(eyeris_preproc$timeseries$block_1$time_secs))
)
🐛 Bug fixes
- BF:
NA slot offset in diagnostic plotting (#161)
- BF: normalize physical machine time bins and convert to seconds /
start at 0 seconds (#162)
- BF: unit displayed on the x-axis doesn’t match the unit listed on
the x-axis text label in plots (#162)
- BF: minor issue where a manually specified block number in
load_asc() wasn’t being translated to the column
block in the resulting list of time series data frames
- BF: minor issue where setting
block = NULL in
load_asc() didn’t actually omit the block column values
from the resulting data frames within the returned eyeris
list object
🔧 Minor improvements and
fixes
- RF: update package title to match that of the published bioRxiv
preprint
- RF: Deprecated the
num_previews parameter in
plot().
- Please use
preview_n instead.
- DOC: manually update citation file to include all authors + bioRxiv
preprint DOI (#152)
- DOC: incorrect URIs in
eyeris documentation for
load_asc() function (#160)
- DOC: standardize default values for
deblink()
standalone [previously 40ms] vs. in glassbox()
[now all 50ms] (#163)
- DOC: updates to
pkgdown documentation website:
- Matching accent color theme with the
eyeris hex
logo
- New nav bar items (buttons/links to access the bioRxiv preprint and
socials)
- Update funders and contributors list
- Add funders disclaimer statement to the footer
eyeris 1.1.0
✨ New features
- NF: Simplify
glassbox() caller with redesigned
parameters that enhance continuity across all pipeline steps (#148)
📚 Documentation
- DOC: Improved function documentation across the package and added
more usage notes for clarity.
- DOC: Updated styling of documentation website.
🔧 Minor improvements and
fixes
- ENH: Make histograms disabled by default when plotting an
eyeris object (#156).
- RF: Deprecated the
confirm parameter in
glassbox().
- Please use
interactive_preview instead.
- RF: Deprecated the
num_previews parameter in
glassbox().
- Please use
preview_n instead.
- BF: Random seed assignment was not behaving as expcted within the
glassbox() pipeline.
- RF: Modify paths to documentation assets to fix broken links at
build.
eyeris 1.0.1
This non-CRAN release patches a small handful of
documentation-related chores that have no direct impact on the
functionality of eyeris for the end user. The minor
improvements and fixes contained within this release will soon be
bundled with a more substantial feature upgrade when submitted to CRAN
to reduce burden on the CRAN reviewers at this time. Stay tuned!
🔧 Minor improvements and
fixes (#159)
- CHORE: fix duplicate
LICENSE file issue in
release/** branches (#145)
- CHORE: update funders list on
DESCRIPTION (#149)
- CHORE: add DOI badge to
README (#150)
- CHORE: fix citation years in
DESCRIPTION (i.e., put
them in parentheses, per request of CRAN reviewer)
(#151)
- DOC: update
README to include CRAN install
code + option for @latest dev branch via download
with devtools/GitHub (#153)
- DOC: fix version titles + urls on changelog webpage (#154)
- CHORE: change pkgdown docs website deployment rules so that public
webpage only updates on pushes to official release branches, and not the
dev branch (#155)
- DOC: add
CONTRIBUTING.md guidelines file for GitHub
(#157)
- DOC: fix
/man/figures/... image ref issues which is
leading to broken links on the R CRAN read-only GitHub mirror repo (#158)
eyeris 1.0.0
🎉 First CRAN release!
(#144)
This version marks the official launch of the eyeris
package on CRAN.
✨ New features (#125)
- Added example vignettes to demonstrate core functionality:
- Preprocessing pipelines with
glassbox()
- Event-based epoching with
epoch()
- BIDS-style export with
bidsify()
- Custom pipeline extensions using
pipeline_handler()
📚 Documentation (#125)
- Improved function documentation across the package
- Added citation guidance and reproducibility tips
Thanks for checking out eyeris! 🧠👁️
eyeris 0.1.0.9001
🔧 Minor improvements and
fixes
- FF (#115): add more aggressive handling of edge cases in
eyeris::detransient() (#121)
- Specifically, situations where pupil data appear to have already
undergone some type of online filtering directly from the EyeLink Host
PC machine.
- There is now detailed instructions on what to do if this exception
is raised.
- Furthermore, a new
mad_thresh override parameter has
been added to eyeris::detransient() for advanced users to
override the mad_thresh computed property. Note:
this new mad_thresh parameter defaults to NULL
(and should pretty much always stay as such).
- FF (#122): fixed issue with incompatible unicode character in plot
titles (#123)
eyeris 0.1.0.9000
💥 Breaking changes
- NF (#10): add support for
.asc files containing
multiple recording segments within the same file (#120)
- There is a new
block argument added to the
load_asc() function
- The default setting is “auto”, which aims to automatically handle
multiple recording segments within the same
.asc file. We
recommend using this default as this is likely the safer choice
rather than assuming a single-block recording. Furthermore, add
downstream functions are intentionally designed to support any
N number of blocks; using the “auto” setting automatically
enables this support for .asc files containing single
recording blocks by labeling the single recording session as
block_1
- You can also manually specify a different block value (numeric)
instead of “auto”, which can be helpful for multi-block experiments
where each block/run was recorded to a separate
.asc file.
This is especially important to consider when running the downstream
epoch() and bidsify() functions so that
derived files and summary reports are properly labeled with the
correction block/run number
- Currently, there is also a
NULL option; however, this
is likely going to just be a part of beta testing and will
probably be removed in a future version given the foregoing 2 options
should cover most (if not all) use cases
✨ New features
- NF: robust HTML and PDF output summary sidecar reports within
bidsify() (#120)
- Here, reports are well-organized both by block/run and any specific
event message epochs that have been processed using the
epoch() function
- For epoched data, we now provide a useful interactive
utility within the epoch-specific HTML reports: you can now use
your mouse and/or keyboard to swiftly navigate through an interactive
gallery of pupil plot segments from every single trial from any given
subject, right out-of-the-box! We hope this alleviates some of the
complexities/roadblocks users might face when needing to perform manual
inspections of their data for quality assurance and/or diagnostic
purposes.
🔧 Minor improvements and
fixes
- FF (#118): resolved a minor bug in the EyeLink EDF header
model and version fields for data collected on
newer EyeLink hardware/software (#120)
- ENH: event epoching is now both more robust and
super fast (#120)
- We have implemented more efficient data structures to swiftly handle
large sets of pupil samples in rapid time
- We have also added in better visual feedback within the console
regarding epoching progress
- Similarly, these added benefits coincide nicely with the new
multi-block support (#10)
- General bug fixes and enhancements to codebase and front-end UX
(#120)
eyeris 0.0.0.9000
- BF: bug fix (in the release branch)
- FF: feature fix (bug fixes in the dev
branch)
- RF: refactoring
- NF: new feature
- ENH: enhancement
- DOC: for documentation-related updates and
changes
- TEST: for commits that add or change unit
tests
- CHORE: like RF but usually less
important changes
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