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enviPathR: Client for the 'enviPath' 'RESTful' API
The environmental pathway database ('enviPath') is a key resource for the
functional annotation and pathway prediction of microbial communities,
providing knowledge on biotransformation pathways along with the chemical
reactions and produced compounds. This package enables the programmatic
access to 'enviPath' by porting the database 'RESTful' API from R. This
includes methods to both retrieve entries and predict pathways for custom
compounds.
| Version: |
1.0.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
BiocParallel, httr2, stats, stringr, tools |
| Suggests: |
BiocStyle, ggraph, httptest2, igraph, knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2026-10-14 |
| DOI: |
10.32614/CRAN.package.enviPathR (may not be active yet) |
| Author: |
Giulio Benedetti 
[aut, cre, cph] |
| Maintainer: |
Giulio Benedetti <giulio.benedetti at utu.fi> |
| BugReports: |
https://github.com/enviPath/enviPathR/issues |
| License: |
Artistic-2.0 |
| URL: |
https://envipath.github.io/enviPathR/ |
| NeedsCompilation: |
no |
| Citation: |
enviPathR citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
enviPathR results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=enviPathR
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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