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lrren() to properly extract predicted RR
values for cross validation after update using
terra::extract()pval_correct() functionplot_perturb() function that was
presenting a warning by specifying cref0plot_cols correctly renamed cols
in div_plot() and seq_plot() functionsraster, rgeos, and
sp packages in Imports with terra and
sf because of imminent package retirementsmaptools from Suggests (replaced with new
internal function as.im.SpatRaster())raster is a dependency of RStoolbox
(at present) which is used in the vignettefuture::plan(future::multisession) in tests to
remove the files in temp directorysparr package in ‘package.R’methods::is() with inherits() and
methods is no longer Importsmaptools and RStoolbox to Suggests
(used in the package vignette)div_plot() and seq_plot() internal
functions, replaced if (class(input) == "im") with
if (methods::is(input, "im"))methods package to Importsutils package to Suggests because “zzz.R”
calls the packageDescription() functionspatstat.random package from Imports to Suggests
because the rpoispp() function is only used for testsperlrren() function that will now keep the
predicted values even if NAplot_perturb() function that will now
project rasters using method = "bilinear" for continuous
valuesspatstat.core and
spatstat.linnet packages based on feedback from the
Spatstat Team (Adrian Baddeley and Ege Rubak). All random generators in
spatstat.core were moved to a new package
spatstat.random
spatstat.geom, spatstat.core,
spatstat.linnet, and spatstat (>=2.0-0) are
no longer Depends.spatstat.geom and spatstat.random are now
Importsspatstat.data is now Suggests.maptools is no longer Importsperlrren(),
pval_correct(), lrren() functionsplot_cv() function that will specify the
size of the confidence interval in the subtitle based on the chosen
alpha levelparallelly.makeNodePSOCK.setup_strategy = sequential for
all CRAN tests as suggested by the maintainer for the
future and parallelly packages who is actively
working on a solution. See the
GitHub issue.LazyData: true from ‘DESCRIPTION’ file because
the package has no data accessed via a data() command and
has no data/ directory (in response to CRAN NOTE:
‘LazyData’ is specified without a ‘data’ directory)future package maintainer, now
spatial_power() and jitter_power() functions
reset future strategy when exitingparallelly.makeNodePSOCK.setup_strategy = sequential for
MacOS environments running tcltk until
parallelly (>=1.26.1-9002) is on CRAN. This workaround
was suggested by the parallelly maintainer. See
the GitHub issue.spatstat package to new subsetted packages
based on feedback from the Spatstat Team (Adrian Baddeley and Ege
Rubak). Now spatstat.geom, spatstat.core,
spatstat.linnet, and spatstat (>= 2.0-0)
are in Dependsparallel and doParallel packages
in Imports with doFuture, doRNG, and
future packages to allow for parallel processing in
lrren() and perlrren() functions to work
across all CRAN environmentsutils package from Imports because the progress
bar in lrren() and perlrren() functions is now
produced with a helper function in utils.R that imports the
iterators packagen_core argument in lrren()
and perlrren() to be n_core = 2 to match
documentationpval_correct() when
p_correct = "FDR" that will return the minimum p-value
instead of NULL if no p-value is less than the p-critical valuecref0 and cref1 arguments in
plot_predict() and plot_perturb() functions
for PROJ6. Now calls sp::CRS() function within the
raster::projectRaster() function and reformats the default
argument valueslrren()
and perlrren() functions and testthat checks for PROJ6
updates in plot_predict() and plot_perturb()
functionsspatstat package to new subsetted packages
based on feedback from the Spatstat Team (Adrian Baddeley and Ege
Rubak). spatstat.geom and spatstat.core
packages replace spatstat package in Importsp_correct argument to lrren() and
perlrren() which calls a new, internal function
pval_correct() that calculates three types of corrections
for multiple testing (FDR, Sidak, Bonferroni)lrren() that is
not used in plot_cv()plot_cv(),
plot_obs(), and plot_predict() to remove
"Warning message: In graphics::par(op): calling par(new=TRUE) with no plot"lrren() and
perlrren() as there is a known error with
makePSOCKcluster() in R version > 4.0.0 (created error only in
r-patched-solaris-x86 and r-release-macos-x86_64).These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.