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Implements various general algorithms to estimate missing elements of a Euclidean (squared) distance matrix. Includes optimization methods based on semi-definite programming found in Alfakih, Khadani, and Wolkowicz (1999)<doi:10.1023/A:1008655427845>, a non-convex position formulation by Fang and O'Leary (2012)<doi:10.1080/10556788.2011.643888>, and a dissimilarity parameterization formulation by Trosset (2000)<doi:10.1023/A:1008722907820>. When the only non-missing distances are those on the minimal spanning tree, the guided random search algorithm will complete the matrix while preserving the minimal spanning tree following Rahman and Oldford (2018)<doi:10.1137/16M1092350>. Point configurations in specified dimensions can be determined from the completions. Special problems such as the sensor localization problem, as for example in Krislock and Wolkowicz (2010)<doi:10.1137/090759392>, as well as reconstructing the geometry of a molecular structure, as for example in Hendrickson (1995)<doi:10.1137/0805040>, can also be solved. These and other methods are described in the thesis of Adam Rahman(2018)<https://hdl.handle.net/10012/13365>.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.2.0) |
| Imports: | Matrix, igraph, lbfgs, truncnorm, MASS, nloptr, vegan, sdpt3r, utils, methods, stats |
| Published: | 2021-09-10 |
| Author: | Adam Rahman [aut], R. Wayne Oldford [aut, cre, ths] |
| Maintainer: | R. Wayne Oldford <rwoldford at uwaterloo.ca> |
| License: | GPL-2 | GPL-3 |
| URL: | https://github.com/great-northern-diver/edmcr |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| In views: | MissingData |
| CRAN checks: | edmcr results |
| Reference manual: | edmcr.pdf |
| Package source: | edmcr_0.2.0.tar.gz |
| Windows binaries: | r-devel: edmcr_0.2.0.zip, r-release: edmcr_0.2.0.zip, r-oldrel: edmcr_0.2.0.zip |
| macOS binaries: | r-release (arm64): edmcr_0.2.0.tgz, r-oldrel (arm64): edmcr_0.2.0.tgz, r-release (x86_64): edmcr_0.2.0.tgz, r-oldrel (x86_64): edmcr_0.2.0.tgz |
| Old sources: | edmcr archive |
| Reverse imports: | graphicalExtremes |
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