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Convert ecocomDP Data to Another Model Format

library(ecocomDP)

Converting ecocomDP data to another model format can be as simple as calling a single function. We currently support conversion to the Darwin Core Archive (DwC-A) Event Core.

DwC-A Event Core

mypath <- paste0(tempdir(), "/dwca")
dir.create(mypath)

convert_to_dwca(
  path = mypath, 
  core_name = "event", 
  source_id = "edi.193.5", 
  derived_id = "edi.834.2", 
  user_id = "ecocomdp",
  user_domain = "EDI")
#> Reading edi.193.5
#>  [0%] Downloaded 0 bytes...
#>  [0%] Downloaded 0 bytes...
#>  [0%] Downloaded 0 bytes...
#>  [0%] Downloaded 0 bytes...
#>  [0%] Downloaded 0 bytes...
#>  [0%] Downloaded 0 bytes...
#>  [0%] Downloaded 0 bytes...
#>  [0%] Downloaded 0 bytes...
#>
#> Validating edi.193.5:
#>   Required tables
#>   Column names
#>   Required columns
#>   Column classes
#>   Datetime formats
#>   Primary keys
#>   Composite keys
#>   Referential integrity
#>   Latitude and longitude format
#>   Latitude and longitude range
#>   Elevation
#>
#> Creating DwC-A Event Core tables
#> Creating DwC-A Event Core EML
#> Reading EML of L1 data package edi.193.5
#> Reading EML of L0 data package knb-lter-hfr.118.33
#> Creating EML of L2 data package edi.834.2
#> Updating:
#>   <eml>
#>   <access>
#>   <dataset>
#>   <alternateIdentifier>
#>   <title>
#>   <pubDate>
#>   <abstract>
#>   <keywordSet>
#>   <methods>
#>   <dataTable>
#>   <otherEntity>
#>   <annotations>
#>   </eml>
#>   Writing EML
#> Validating EML
#> Validation passed :)
#> Done.

And there you have it! The DwC-A tables and metadata ready for publication in GBIF!

dir(mypath)
#> [1] "edi.834.2.xml"                 "event.csv"                     "extendedmeasurementorfact.csv"
#> [4] "meta.xml"                      "occurrence.csv"

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.