The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Reaction rate dynamics can be retrieved from metabolite concentration time courses. User has to provide corresponding stoichiometric matrix but not a regulation model (Michaelis-Menten or similar). Instead of solving an ordinary differential equation (ODE) system describing the evolution of concentrations, we use B-splines to catch the concentration and rate dynamics then solve a least square problem on their coefficients with non-negativity (and optionally monotonicity) constraints. Constraints can be also set on initial values of concentration. The package 'dynafluxr' can be used as a library but also as an application with command line interface dynafluxr::cli("-h") or graphical user interface dynafluxr::gui().
Version: | 1.0.1 |
Depends: | bspline (≥ 2.5.0), nlsic (≥ 1.1.1) |
Imports: | optparse, qpdf, arrApply, slam, gmresls (≥ 0.2), shiny, shinyjs, shinyFiles |
Suggests: | RUnit, knitr |
Published: | 2025-07-10 |
DOI: | 10.32614/CRAN.package.dynafluxr |
Author: | Serguei Sokol [aut, cre] |
Maintainer: | Serguei Sokol <sokol at insa-toulouse.fr> |
License: | GPL-2 |
Copyright: | see file COPYRIGHTS |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | dynafluxr results |
Reference manual: | dynafluxr.pdf |
Vignettes: |
glyco (source, R code) |
Package source: | dynafluxr_1.0.1.tar.gz |
Windows binaries: | r-devel: not available, r-release: dynafluxr_1.0.1.zip, r-oldrel: not available |
macOS binaries: | r-release (arm64): dynafluxr_1.0.1.tgz, r-oldrel (arm64): dynafluxr_1.0.1.tgz, r-release (x86_64): dynafluxr_1.0.1.tgz, r-oldrel (x86_64): dynafluxr_1.0.1.tgz |
Please use the canonical form https://CRAN.R-project.org/package=dynafluxr to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.