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An implementation of functions to optimize ordering of nodes in a dendrogram, without affecting the meaning of the dendrogram. A dendrogram can be sorted based on the average distance of subtrees, or based on the smallest distance value. These sorting methods improve readability and interpretability of tree structure, especially for tasks such as comparison of different distance measures or linkage types and identification of tight clusters and outliers. As a result, it also introduces more meaningful reordering for a coupled heatmap visualization. This method is described in "dendsort: modular leaf ordering methods for dendrogram representations in R", F1000Research 2014, 3: 177 <doi:10.12688/f1000research.4784.1>.
Version: | 0.3.4 |
Suggests: | knitr, RColorBrewer, gplots, seriation, gapmap, rmarkdown |
Published: | 2021-04-20 |
DOI: | 10.32614/CRAN.package.dendsort |
Author: | Ryo Sakai [aut], Evan Biederstedt [cre, aut] |
Maintainer: | Evan Biederstedt <evan.biederstedt at gmail.com> |
BugReports: | https://github.com/evanbiederstedt/dendsort/issues |
License: | GPL-2 | GPL-3 |
URL: | https://github.com/evanbiederstedt/dendsort |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | dendsort results |
Reference manual: | dendsort.pdf |
Vignettes: |
"Figures from Manuscript" |
Package source: | dendsort_0.3.4.tar.gz |
Windows binaries: | r-devel: dendsort_0.3.4.zip, r-release: dendsort_0.3.4.zip, r-oldrel: dendsort_0.3.4.zip |
macOS binaries: | r-release (arm64): dendsort_0.3.4.tgz, r-oldrel (arm64): dendsort_0.3.4.tgz, r-release (x86_64): dendsort_0.3.4.tgz, r-oldrel (x86_64): dendsort_0.3.4.tgz |
Old sources: | dendsort archive |
Reverse imports: | pagoda2 |
Reverse suggests: | BloodCancerMultiOmics2017, ComplexHeatmap, gapmap |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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