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The goal of dabr is to provide functions to manage databases: select, update, insert, and delete records, list tables, backup tables as CSV files, and import CSV files as tables.
You can install the released version of dabr from CRAN with:
install.packages("dabr")And the development version from GitHub with:
# install.packages("remotes")
remotes::install_github("special-uor/dabr", "dev")Connecting to the Reading Palaeofire Database (RPD), locally
installed under the name RPD-latest:
conn <- dabr::open_conn_mysql("RPD-latest",
password = rstudioapi::askForPassword(prompt = "Password"))Explore the database structure by listing the tables and their attributes:
dabr::list_tables(conn)
#>
#>
#> |age_model |
#> |:---------|
#> |ID_MODEL |
#> |ID_SAMPLE |
#> |mean |
#> |median |
#> |UNCERT_5 |
#> |UNCERT_25 |
#> |UNCERT_75 |
#> |UNCERT_95 |
#>
#>
#> |chronology |
#> |:----------------|
#> |ID_MODEL |
#> |ID_SAMPLE |
#> |original_est_age |
#>
#>
#> |date_info |
#> |:-------------------|
#> |ID_ENTITY |
#> |ID_DATE_INFO |
#> |material_dated |
#> |date_type |
#> |avg_depth |
#> |thickness |
#> |lab_number |
#> |age_C14 |
#> |age_calib |
#> |error |
#> |correlation_info |
#> |age_used |
#> |reason_age_not_used |
#> |notes |
#>
#>
#> |entity |
#> |:--------------------|
#> |ID_SITE |
#> |ID_ENTITY |
#> |entity_name |
#> |latitude |
#> |longitude |
#> |elevation |
#> |depositional_context |
#> |measurement_method |
#> |TYPE |
#> |source |
#> |core_location |
#> |last_updated |
#> |ID_UNIT |
#>
#>
#> |entity_link_publication |
#> |:-----------------------|
#> |ID_ENTITY |
#> |ID_PUB |
#>
#>
#> |model_name |
#> |:----------|
#> |ID_MODEL |
#> |model_name |
#>
#>
#> |publication |
#> |:-----------|
#> |ID_PUB |
#> |citation |
#> |pub_DOI_URL |
#> |bibentry |
#>
#>
#> |sample |
#> |:---------------------------|
#> |ID_ENTITY |
#> |ID_SAMPLE |
#> |avg_depth |
#> |sample_thickness |
#> |charcoal_measurement |
#> |analytical_sample_size |
#> |analytical_sample_size_unit |
#>
#>
#> |site |
#> |:----------------|
#> |ID_SITE |
#> |site_name |
#> |latitude |
#> |longitude |
#> |elevation |
#> |site_type |
#> |water_depth |
#> |basin_size_class |
#> |catch_size_class |
#> |flow_type |
#> |basin_size_km2 |
#> |catch_size_km2 |
#>
#>
#> |unit |
#> |:-------|
#> |ID_UNIT |
#> |UNIT |ALWAYS! close your connection to the database (when you are done):
dabr::close_conn(conn)These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.