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In this document we show how to apply functions to the left-hand side of an observation equation.
# Create model object
obj = ctsmTMB$new()
# Add system equations
obj$addSystem(
dx ~ theta * (mu-x) * dt + sigma_x*dw
)
Let’s assume that our observations \(y_{t}\) are log-normally distributed
conditioned on \(x_{t}\) i.e. \[
\log y_{t_{i}} \sim N(x_{t_{i}},\sigma_{y}^{2})
\] It is sufficient for the user to provide the data column
y
in the provided data.frame
to
e.g. estimate
or predict
by adding the
following observation equation
Note that these kind of observation equations, where the left-hand
side is a function of one (or more) observed variables must be
explicitly named using the obsnames
argument.
The names given with obsnames
are important because they
are needed to specify the observation variance. As an example the code
below does not work, because the observation was named
log_y
## Error in check_observation_variance_eqs(form, self, private): Please add an observation equation for y before specifying its variance
So the correct way to add the observation variance is this:
You must supply multiple obsnames
if you are supplying
multiple observation equations, although the name will only be used if
the left-hand side is not just a single variable i.e.
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