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craftgrn 0.1.7

• Updated DESCRIPTION references to include author-year text for the next CRAN update.
• Fixed a CRAN macOS test failure by comparing config-resolved relative paths against the canonical project directory path.

craftgrn 0.1.6

• Revised DESCRIPTION references to avoid CRAN incoming spell-check notes and replaced the arXiv URL reference with the requested arXiv DOI format.

craftgrn 0.1.5

• Addressed CRAN resubmission feedback by adding method references to DESCRIPTION, completing value documentation, replacing \dontrun{} examples, avoiding default writes to the working directory, and removing a fixed seed from package function code.

craftgrn 0.1.4

• Added production-oriented Module 3 APIs for regulatory topic modeling: run_topic_modeling(), module3_construct_docs(), module3_train_topic_models(), module3_extract_topics(), and build_module3_qc_report().
• Added reusable Module 3 topic-input caches and compact pass-only topic-link output as the default production behavior.
• Added visualize_topic_modeling_results() and visualize_differential_grns() for standard Module 3 result browsers.

craftgrn 0.1.3

• Fixed Windows incoming pretest failures by normalizing path comparisons in report tests and hardening temporary topic-model fixture directory creation.
• Revised CRAN-facing package metadata wording to reduce incoming spell-check notes for abbreviated scientific terms.

craftgrn 0.1.2

• Initial CRAN submission candidate.
• Added Module 1 TFBS prediction, Module 2 TF-target prediction, and Module 3 regulatory topic modeling workflows.
• Added package-native QC reports and pkgdown documentation.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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