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Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
Version: | 2.8 |
Depends: | ape, nloptr, GenSA |
Imports: | expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools |
Suggests: | testthat, knitr, rmarkdown |
Published: | 2022-06-13 |
DOI: | 10.32614/CRAN.package.corHMM |
Author: | Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut] |
Maintainer: | Jeremy Beaulieu <jmbeauli at uark.edu> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
NeedsCompilation: | no |
CRAN checks: | corHMM results |
Reference manual: | corHMM.pdf |
Vignettes: |
Generalized corHMM |
Package source: | corHMM_2.8.tar.gz |
Windows binaries: | r-devel: corHMM_2.8.zip, r-release: corHMM_2.8.zip, r-oldrel: corHMM_2.8.zip |
macOS binaries: | r-release (arm64): corHMM_2.8.tgz, r-oldrel (arm64): corHMM_2.8.tgz, r-release (x86_64): corHMM_2.8.tgz, r-oldrel (x86_64): corHMM_2.8.tgz |
Old sources: | corHMM archive |
Reverse imports: | hisse |
Reverse suggests: | DAISIEprep |
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These binaries (installable software) and packages are in development.
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