The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

copyseparator: Assembling Long Gene Copies from Short Read Data

Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.

Version: 1.2.0
Depends: R (≥ 3.5.0)
Imports: ape, seqinr, stringr, kmer, DECIPHER, beepr, Biostrings, grDevices, doParallel, foreach, parallel
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2022-11-25
DOI: 10.32614/CRAN.package.copyseparator
Author: Lei Yang
Maintainer: Lei Yang <leiyangslu at gmail.com>
BugReports: https://github.com/LeiYang-Fish/copyseparator/issues
License: GPL-2
URL: https://github.com/LeiYang-Fish/copyseparator
NeedsCompilation: no
Materials: NEWS
CRAN checks: copyseparator results

Documentation:

Reference manual: copyseparator.pdf
Vignettes: Usage_of_copyseparator

Downloads:

Package source: copyseparator_1.2.0.tar.gz
Windows binaries: r-devel: copyseparator_1.2.0.zip, r-release: copyseparator_1.2.0.zip, r-oldrel: copyseparator_1.2.0.zip
macOS binaries: r-release (arm64): copyseparator_1.2.0.tgz, r-oldrel (arm64): copyseparator_1.2.0.tgz, r-release (x86_64): copyseparator_1.2.0.tgz, r-oldrel (x86_64): copyseparator_1.2.0.tgz
Old sources: copyseparator archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=copyseparator to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.