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Reconstruct networks from multi-omics data sets with the collaborative graphical lasso (coglasso) algorithm described in Albanese, A., Kohlen, W., and Behrouzi, P. (2024) <doi:10.48550/arXiv.2403.18602>. Build multiple networks using the coglasso() function, select the best one with stars_coglasso().
Version: | 1.0.2 |
Depends: | R (≥ 2.10) |
Imports: | Matrix, Rcpp (≥ 1.0.11), stats, utils |
LinkingTo: | Rcpp, RcppEigen |
Suggests: | igraph, knitr, rmarkdown, testthat (≥ 3.0.0) |
Published: | 2024-04-03 |
DOI: | 10.32614/CRAN.package.coglasso |
Author: | Alessio Albanese |
Maintainer: | Alessio Albanese <alessio.albanese at wur.nl> |
BugReports: | https://github.com/DrQuestion/coglasso/issues |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
URL: | https://github.com/DrQuestion/coglasso, https://drquestion.github.io/coglasso/ |
NeedsCompilation: | yes |
Citation: | coglasso citation info |
Materials: | README NEWS |
CRAN checks: | coglasso results |
Reference manual: | coglasso.pdf |
Vignettes: |
Reconstructing mult-omics networks with coglasso Reproduction of manuscript's results |
Package source: | coglasso_1.0.2.tar.gz |
Windows binaries: | r-devel: coglasso_1.0.2.zip, r-release: coglasso_1.0.2.zip, r-oldrel: coglasso_1.0.2.zip |
macOS binaries: | r-release (arm64): coglasso_1.0.2.tgz, r-oldrel (arm64): coglasso_1.0.2.tgz, r-release (x86_64): coglasso_1.0.2.tgz, r-oldrel (x86_64): coglasso_1.0.2.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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