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coffee 0.4.3

• further corrections regarding a bug in the Vignette.

coffee 0.4.2

• draw.strat now plots gaps better when using BCAD
• labels can be plotted in draw.strat (not done by default)
• strat runs now write a file ending in _ages.txt, containing the age estimates (95% ranges, means, medians, modes) into the site’s folder, and if gaps were modelled, another file ending in _gaps.txt with the same estimates for the gap sizes.
• new function MCMCrings to calculate both age estimates and age offsets for a C14-dated tree.
• corrected a bug in the Vignette.

coffee 0.4.1

• further separation of the ‘rice’ and ‘rintcal’ packages within ‘coffee’
• added a function ‘strat.cleanup()’ to remove previous runs

coffee 0.4.0

• now linking to both the ‘rice’ and ‘rintcal’ packages
• updated how gaps in strats are plotted

coffee 0.3.0

• updated the vignette
• added functions scissors and thinner for manipulation of MCMC output
• enhanced strat code so it runs around 40% faster
• previous strat runs can now be reloaded (using run=FALSE)
• files are now read and written to faster (using fread, fwrite)
• strat iterations can either be loaded into memory or written to files
• added fit measure (and also offset for rings)

coffee 0.2.0

• now links to the rintcal package (renamed from IntCal)
• the strat function now handles undated levels, blocks of dates, and different types of gaps (of exactly known length, or according to a normal or gamma distribution)

coffee 0.1.1

• added references to the methods to the DESCRIPTION file
• replaced all instances of cat() with message()
• the original par settings are now saved if the function is exited

coffee 0.1.0

• this is the first CRAN iteration of the coffee package

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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