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To cite cloneRate in publications use:

Johnson B, Shuai Y, Schweinsberg J, Curtius K (2023). “cloneRate: fast estimation of single-cell clonal dynamics using coalescent theory.” Bioinformatics. https://doi.org/10.1093/bioinformatics/btad561.

Corresponding BibTeX entry: 

  @Article{,
    title = {cloneRate: fast estimation of single-cell clonal dynamics
      using coalescent theory},
    author = {Brian Johnson and Yubo Shuai and Jason Schweinsberg and
      Kit Curtius},
    journal = {Bioinformatics},
    year = {2023},
    url = {https://doi.org/10.1093/bioinformatics/btad561},
  }

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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