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Type: Package
Title: Ready-to-Use Curated Gene Sets for 'cinaR'
Version: 0.1.1
Description: Immune related gene sets provided along with the 'cinaR' package.
License: GPL-3
Encoding: UTF-8
LazyData: true
URL: https://github.com/eonurk/cinaR-genesets
BugReports: https://github.com/eonurk/cinaR-genesets/issues/
Depends: R (≥ 3.5.0)
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-01-20 18:04:39 UTC; karako
Author: Onur Karakaslar [aut, cre], Duygu Ucar ORCID iD [aut]
Maintainer: Onur Karakaslar <eonurkara@gmail.com>
Repository: CRAN
Date/Publication: 2021-01-22 10:40:09 UTC

PBMC scRNAseq modules

Description

PBMC scRNAseq modules

Usage

data(PBMC.scRNAseq)

Format

An object of class GMT; see read.gmt from qusage package.

References

Márquez et al., 2020; Nehar-Belaid et al., 2020 doi: 10.1038/s41590-020-0743-0 doi: 10.1038/s41467-020-14396-9


Dice Major

Description

Dice Major

Usage

data(dice.major)

Format

An object of class GMT; see read.gmt from qusage package.

References

Schmiedel et al. (2018) Immunity 175:1701-1715 (doi: 10.1016/j.cell.2018.10.022)


Immune modules

Description

Immune modules

Usage

data(VP2008)

Format

An object of class GMT; see read.gmt from qusage package.

References

Chaussabel et al. (2008) Immunity 29:150-164 (PubMed)


Wikipathways

Description

Wikipathways

Usage

data(wiki)

Format

An object of class GMT; see read.gmt from qusage package.

References

Pico et al. (2008) PLOS Biology (doi: 10.1371/journal.pbio.0060184)


Wikipathways inflammation

Description

Wikipathways inflammation

Usage

data(wiki.inf)

Format

An object of class GMT; see read.gmt from qusage package.

References

Pico et al. (2008) PLOS Biology (doi: 10.1371/journal.pbio.0060184)

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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