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Quantify and visualise various measures of chemical diversity and dissimilarity, for phytochemical compounds and other sets of chemical composition data. Importantly, these measures can incorporate biosynthetic and/or structural properties of the chemical compounds, resulting in a more comprehensive quantification of diversity and dissimilarity. For details, see Petrén, Köllner and Junker (2023) <doi:10.1111/nph.18685>.
Version: | 0.3.0 |
Depends: | R (≥ 2.10) |
Imports: | jsonlite, httr, vegan, webchem, fmcsR, ChemmineR, hillR, ape, GUniFrac, tidygraph, igraph, ggraph, ggplot2, gridExtra, ggdendro, tidyr, rlang, curl |
Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
Published: | 2023-08-17 |
DOI: | 10.32614/CRAN.package.chemodiv |
Author: | Hampus Petrén |
Maintainer: | Hampus Petrén <hampus.petren at gmail.com> |
BugReports: | https://github.com/hpetren/chemodiv/issues |
License: | GPL (≥ 3) |
URL: | https://github.com/hpetren/chemodiv |
NeedsCompilation: | no |
Citation: | chemodiv citation info |
Materials: | README NEWS |
CRAN checks: | chemodiv results |
Reference manual: | chemodiv.pdf |
Vignettes: |
Analysing Phytochemical Diversity – An introduction to *chemodiv* |
Package source: | chemodiv_0.3.0.tar.gz |
Windows binaries: | r-devel: chemodiv_0.3.0.zip, r-release: chemodiv_0.3.0.zip, r-oldrel: chemodiv_0.3.0.zip |
macOS binaries: | r-release (arm64): chemodiv_0.3.0.tgz, r-oldrel (arm64): chemodiv_0.3.0.tgz, r-release (x86_64): chemodiv_0.3.0.tgz, r-oldrel (x86_64): chemodiv_0.3.0.tgz |
Old sources: | chemodiv archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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