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celliverse: An Ecosystem for Exploring the Universe of Single-Cell Data
Contains functions for single-cell RNA sequencing data analysis. It provides core functionalities for clustering cells, identifying markers for predefined clusters, performing sub-clustering of major cell populations, and discovering markers within custom-selected subsets of cells. 'CelliVerse' also includes methods for analyzing cluster similarity and generating intuitive visualizations. Designed to be independent of library size and other sample- or cell-level confounding effects, 'CelliVerse' ensures reliable and interpretable results across a wide range of datasets.
Fred Viole and David Nawrocki (2013, ISBN:1490523995).
Csardi G, Nepusz T (2006). "The 'igraph' software package for complex network research." InterJournal, Complex Systems, 1695.
Adopted algorithms and sources are referenced in function document.
| Version: |
0.0.2 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
Matrix, Seurat, SummarizedExperiment, scales, ggplot2, magrittr, igraph, cli, dplyr, data.table, stringr, tidyr, RColorBrewer, ggnewscale, patchwork, tidyselect, methods, Rcpp |
| LinkingTo: |
Rcpp, RcppEigen |
| Suggests: |
R.rsp, htmltools, knitr, rmarkdown, plumber, jsonlite, httr2, processx, later, promises, callr, httpuv, openssl, fs, svglite, zip, withr, SeuratObject, ComplexHeatmap, hdf5r, rstudioapi |
| Published: |
2026-09-12 |
| DOI: |
10.32614/CRAN.package.celliverse (may not be active yet) |
| Author: |
Adrian Salavaty 
[aut, cre] |
| Maintainer: |
Adrian Salavaty <abbas.salavaty at gmail.com> |
| BugReports: |
https://github.com/asalavaty/celliverse/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/asalavaty/celliverse,
https://asalavaty.github.io/celliverse/ |
| NeedsCompilation: |
yes |
| Language: |
en-US |
| Citation: |
celliverse citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
celliverse results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=celliverse
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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