The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Implements a method for identifying and removing the cell-cycle effect from scRNA-Seq data. The description of the method is in Barron M. and Li J. (2016) <doi:10.1038/srep33892>. Identifying and removing the cell-cycle effect from single-cell RNA-Sequencing data. Submitted. Different from previous methods, ccRemover implements a mechanism that formally tests whether a component is cell-cycle related or not, and thus while it often thoroughly removes the cell-cycle effect, it preserves other features/signals of interest in the data.
| Version: | 1.0.4 |
| Depends: | R (≥ 2.10.0) |
| Imports: | stats, utils |
| Suggests: | knitr, rmarkdown |
| Published: | 2017-08-19 |
| DOI: | 10.32614/CRAN.package.ccRemover |
| Author: | Jun Li [aut, cre], Martin Barron [aut] |
| Maintainer: | Jun Li <jun.li at nd.edu> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | ccRemover results |
| Reference manual: | ccRemover.pdf |
| Vignettes: |
sparseDC |
| Package source: | ccRemover_1.0.4.tar.gz |
| Windows binaries: | r-devel: ccRemover_1.0.4.zip, r-release: ccRemover_1.0.4.zip, r-oldrel: ccRemover_1.0.4.zip |
| macOS binaries: | r-release (arm64): ccRemover_1.0.4.tgz, r-oldrel (arm64): ccRemover_1.0.4.tgz, r-release (x86_64): ccRemover_1.0.4.tgz, r-oldrel (x86_64): ccRemover_1.0.4.tgz |
| Old sources: | ccRemover archive |
Please use the canonical form https://CRAN.R-project.org/package=ccRemover to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.