bsocialv2: Analysis of Microbial Social Behavior in Bacterial Consortia

Provides an S4 class and methods for analyzing microbial social behavior in bacterial consortia. Includes growth parameter extraction, social behavior classification (cooperators/cheaters/neutrals), diversity effect analysis, consortium assembly path finding, and stability analysis via coefficient of variation. Methods are described in Purswani et al. (2017) <doi:10.3389/fmicb.2017.00919>.

Version:	0.1.1
Depends:	R (≥ 4.0), methods
Imports:	dplyr, ggplot2, grDevices, growthcurver, igraph, magrittr, reshape2, rlang, stats, tidyr, viridis
Suggests:	readr, testthat (≥ 3.0.0), knitr, rmarkdown
Published:	2026-04-13
DOI:	10.32614/CRAN.package.bsocialv2 (may not be active yet)
Author:	Maria Garcia Toledo [aut], Juan Emilio Martinez Manjon [aut, cre], Jessica Purswani [aut], Rocio Romero Zaliz [aut]
Maintainer:	Juan Emilio Martinez Manjon <juanemartinez999 at hotmail.com>
BugReports:	https://github.com/Juane99/bsocialv2/issues
License:	MIT + file LICENSE
URL:	https://github.com/Juane99/bsocialv2
NeedsCompilation:	no
Materials:	README, NEWS
CRAN checks:	bsocialv2 results

Documentation:

Reference manual:	bsocialv2.html , bsocialv2.pdf
Vignettes:	Analyzing Microbial Social Behavior with bsocialv2 (source, R code)

Downloads:

Package source:	bsocialv2_0.1.1.tar.gz
Windows binaries:	r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries:	r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): bsocialv2_0.1.1.tgz, r-oldrel (x86_64): bsocialv2_0.1.1.tgz

Linking:

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