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Tools to fit Bayesian state-space models to animal tracking data. Models are provided for location filtering, location filtering and behavioural state estimation, and their hierarchical versions. The models are primarily intended for fitting to ARGOS satellite tracking data but options exist to fit to other tracking data types. For Global Positioning System data, consider the 'moveHMM' package. Simplified Markov Chain Monte Carlo convergence diagnostic plotting is provided but users are encouraged to explore tools available in packages such as 'coda' and 'boa'.
| Version: | 1.1.3 |
| Depends: | R (≥ 3.6.0), rjags (≥ 4-10) |
| Imports: | coda (≥ 0.19-3), dplyr (≥ 1.0.0), ggplot2 (≥ 3.3.2), gridExtra (≥ 2.3), msm (≥ 1.6.8), mvtnorm (≥ 1.1-1), rworldxtra (≥ 1.01), sp (≥ 1.2-3), tibble (≥ 3.0.1), lubridate (≥ 1.7.9) |
| Published: | 2020-09-01 |
| DOI: | 10.32614/CRAN.package.bsam |
| Author: | Ian Jonsen [aut, cre], Sophie Bestley [ctb], Simon Wotherspoon [ctb], Michael Sumner [ctb], Joanna Mills Flemming [ctb] |
| Maintainer: | Ian Jonsen <ian.jonsen at mq.edu.au> |
| BugReports: | https://github.com/ianjonsen/bsam/issues |
| License: | GPL-2 |
| URL: | <https://github.com/ianjonsen/bsam> |
| NeedsCompilation: | no |
| SystemRequirements: | JAGS (>= 4.3.0) |
| Citation: | bsam citation info |
| Materials: | README NEWS |
| In views: | SpatioTemporal, Tracking |
| CRAN checks: | bsam results |
| Reference manual: | bsam.pdf |
| Package source: | bsam_1.1.3.tar.gz |
| Windows binaries: | r-devel: bsam_1.1.3.zip, r-release: bsam_1.1.3.zip, r-oldrel: bsam_1.1.3.zip |
| macOS binaries: | r-release (arm64): bsam_1.1.3.tgz, r-oldrel (arm64): bsam_1.1.3.tgz, r-release (x86_64): bsam_1.1.3.tgz, r-oldrel (x86_64): bsam_1.1.3.tgz |
| Old sources: | bsam archive |
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These binaries (installable software) and packages are in development.
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