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biomod2: Ensemble Platform for Species Distribution Modeling

Functions for species distribution modeling, calibration and evaluation, ensemble of models, ensemble forecasting and visualization. The package permits to run consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences) dataset and to combine them in ensemble models and ensemble projections. Some bench of other evaluation and visualisation tools are also available within the package.

Version: 4.2-5-2
Depends: R (≥ 4.1)
Imports: stats, utils, methods, terra (≥ 1.6-33), sp, reshape, reshape2, abind, foreach, ggplot2, gbm (≥ 2.1.3), rpart, MASS, pROC (≥ 1.15.0), PresenceAbsence, dplyr
Suggests: Hmisc, gam, mgcv, earth, maxnet, mda, nnet, randomForest, xgboost, car, caret, dismo, ENMeval, doParallel, raster, ggpubr, testthat, knitr, markdown, tidyterra, ggtext
Published: 2024-06-14
DOI: 10.32614/CRAN.package.biomod2
Author: Wilfried Thuiller [aut], Damien Georges [aut], Maya Gueguen [aut, cre], Robin Engler [aut], Frank Breiner [aut], Bruno Lafourcade [aut], Remi Patin [aut], Helene Blancheteau [aut]
Maintainer: Maya Gueguen <maya.gueguen at univ-grenoble-alpes.fr>
Contact: Wilfried Thuiller <wilfried.thuiller@univ-grenoble-alpes.fr>, Maya Gueguen <maya.gueguen@univ-grenoble-alpes.fr>, Helene Blancheteau <helene.blancheteau@univ-grenoble-alpes.fr>
BugReports: https://github.com/biomodhub/biomod2/issues
License: GPL-3
URL: https://biomodhub.github.io/biomod2/
NeedsCompilation: no
Materials: README
CRAN checks: biomod2 results

Documentation:

Reference manual: biomod2.pdf
Vignettes: Main functions
Secundary functions
News
Cross-validation
Data preparation
Modeling Options
Presentation
Pseudo-absences
Variability in results
Videos

Downloads:

Package source: biomod2_4.2-5-2.tar.gz
Windows binaries: r-devel: biomod2_4.2-5-2.zip, r-release: biomod2_4.2-5-2.zip, r-oldrel: biomod2_4.2-5-2.zip
macOS binaries: r-release (arm64): biomod2_4.2-5-2.tgz, r-oldrel (arm64): biomod2_4.2-5-2.tgz, r-release (x86_64): biomod2_4.2-5-2.tgz, r-oldrel (x86_64): biomod2_4.2-5-2.tgz
Old sources: biomod2 archive

Reverse dependencies:

Reverse imports: ecospat, gecko, spm
Reverse suggests: blockCV

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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