The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
This package contains tools for extraction and analysis of various n-grams (sequences of n items) derived from biological sequences (proteins or nucleic acids). To deal with the curse of dimensionality of the n-grams, biogram uses Quick Permutation Test (QuiPT) for fast feature filtering.
biogram is available on CRAN, so installation is as simple as:
install.packages("biogram")You can install the latest development version of the code using the
devtools R package.
# Install devtools, if you haven't already.
install.packages("devtools")
library(devtools)
install_github("michbur/biogram")For citation type:
citation("biogram")or use: Michal Burdukiewicz, Piotr Sobczyk and Chris Lauber (2016). biogram: N-Gram Analysis of Biological Sequences. R package version 1.3. https://cran.r-project.org/package=biogram
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.