biocompute: Create and Manipulate BioCompute Objects
Tools to create, validate, and export BioCompute Objects described in King et al. (2019) <doi:10.17605/osf.io/h59uh>. Users can encode information in data frames, and compose BioCompute Objects from the domains defined by the standard. A checksum validator and a JSON schema validator are provided. This package also supports exporting BioCompute Objects as JSON, PDF, HTML, or 'Word' documents, and exporting to cloud-based platforms.
| Version: | 1.1.1 |
| Imports: | methods, jsonlite, yaml, digest, uuid, jsonvalidate, httr, curl, crayon, cli, stringr, magrittr, rmarkdown |
| Suggests: | knitr |
| Published: | 2022-05-03 |
| DOI: | 10.32614/CRAN.package.biocompute |
| Author: | Soner Koc  [aut,
cre],
Jeffrey Grover
[aut],
Nan Xiao [aut],
Dennis Dean [aut],
Seven Bridges Genomics [cph, fnd] |
| Maintainer: | Soner Koc <soner.koc at sevenbridges.com> |
| BugReports: | https://github.com/sbg/biocompute/issues |
| License: | AGPL-3 |
| URL: | https://sbg.github.io/biocompute/, https://github.com/sbg/biocompute |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | biocompute results |
Documentation:
| Reference manual: | biocompute.pdf |
| Vignettes: |
Authoring Biocompute Objects with R: A Case Study An Introduction to BioCompute Objects with R |
Downloads:
| Package source: | biocompute_1.1.1.tar.gz |
| Windows binaries: | r-devel: biocompute_1.1.1.zip, r-release: biocompute_1.1.1.zip, r-oldrel: biocompute_1.1.1.zip |
| macOS binaries: | r-release (arm64): biocompute_1.1.1.tgz, r-oldrel (arm64): biocompute_1.1.1.tgz, r-release (x86_64): biocompute_1.1.1.tgz, r-oldrel (x86_64): biocompute_1.1.1.tgz |
| Old sources: | biocompute archive |
Linking:
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