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Fixed RKHS score prediction to center cross-kernels with the fitted training statistics. A row’s latent score is now invariant to the other rows included in the same prediction batch, including when using the streamed backend.
Added an optional filematrix row-block provider for
future streaming backends. It exposes sequential row/column/block reads
as dense R matrices without changing existing bigmemory
code paths.
Added experimental backend = "filematrix" support
for NIPALS PLS1/PLS2. The backend uses block-wise file reads and avoids
memory-mapped bigmemory access for the predictor/response
inputs. Other PLS algorithms remain outside the filematrix backend
scope.
XtX materialization path for
very wide predictors.options(bigPLSR.stream.block_align = 8192L). All streamed
backends (bigmem SIMPLS, streamed scores, RKHS/klogitpls Gram passes,
and bigmem predict) round their chunk_size up to a
multiple of this alignment, then clamp to the available number of rows.
Typical sweet spots are 4096–16384 on modern CPUs.scores = "big" to avoid large R dense allocations; it
streams directly into a big.matrix.plot_pls_bootstrap_scores() and group-aware
ellipses for plot_pls_biplot() to visualise latent
structures.bigPLSR_stream_kstats() for streamed RKHS
centering statistics and corrected the bigmemory RKHS interface to
accept dense response blocks.future-powered parallel execution to
pls_cross_validate() and pls_bootstrap().pls_bootstrap() with (X, Y) and (X, T)
strategies, percentile and BCa confidence intervals, numerical
summaries, and coefficient boxplots.plot_pls_individuals().options(bigPLSR.mem_budget_gb = 8). Users can override
with algorithm=.algorithm = "kernelpls" and
algorithm = "widekernelpls" implementing Dayal &
MacGregor–style (1997) kernel PLS in X-space and wide-X (XXᵗ)
space.pls_fit() for both dense and bigmemory backends using
RcppArmadillo.pls_fit() for both dense and bigmemory backends.pls_fit().pls_fit() for plsR regression that
features : dense and bigmemory, simpls and nipals.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.