The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

bifrost 0.1.3

• Addressed CRAN reviewer feedback following review of 0.1.2:
  • Added explicit return-value documentation (@return / \value{}) for the exported print.bifrost_search() method, clarifying that the function returns the input object invisibly and is called for its printing side effects.
• Plotting:
  • plot_ic_acceptance_matrix() gains an optional baseline_ic argument to plot and compute diff(IC) relative to the true no-shift baseline (useful when matrix_data begins at the first evaluated shift model rather than the true baseline).
• Documentation / vignettes:
  • Updated the jaw-shape vignette with additional static figures (evolutionary correlation heatmap, IC-trajectory plot, and branch-rate visualization) and improved plotting annotations.

bifrost 0.1.2

• Addressed CRAN reviewer feedback following review of 0.1.1:
  • plot_ic_acceptance_matrix() now saves and restores the user’s graphical parameters via an immediate on.exit() (prevents leaking par() settings across calls).
• Plotting:
  • Added rate_limits argument to plot_ic_acceptance_matrix() (default c(-400, 150)) to control the secondary y-axis limits for the rate-of-improvement overlay (validated numeric length-2, finite).
• Search results output:
  • Added a bifrost_search S3 class and print.bifrost_search() method for searchOptimalConfiguration() results (compact console summary; optional ASCII IC-history plot via txtplot when store_model_fit_history = TRUE; prints IC weights when present).
  • Print output includes a citation hint (citation("bifrost")); package citation metadata updated in inst/CITATION.
• IC weights / no-shift behavior:
  • Standardized ic_weights output across serial and parallel uncertainty-weight modes; always returns a data.frame with consistent columns, and returns an empty data.frame with the same schema when no shifts are detected.
  • When no shifts are detected, model_no_uncertainty now returns the baseline mvgls model (instead of NULL).
• Documentation / vignettes / tests:
  • Updated jaw-shape vignette chunk printing of ic_weights to avoid RStudio paged/Unicode rendering issues.
  • Expanded and stabilized unit tests and CI configuration (including Config/testthat/parallel: false).

bifrost 0.1.1

• Addressed CRAN reviewer feedback following review of 0.1.0:
  • Replaced all uses of shorthand T/F with TRUE/FALSE.
  • Ensured all informational output is suppressible via message()/warning() and controlled by a verbose flag.
  • Redirected all on-disk output generated during model fitting to tempdir() to comply with CRAN file system policies and avoid writing to the user’s working directory.
  • Ensured graphical parameters and global options are restored using immediate on.exit() calls.
  • Refined parallelization behavior to be CRAN-safe and cross-platform:
    • Parallel candidate evaluation uses future with multicore on Unix outside RStudio and multisession otherwise.
    • BLAS/OpenMP threads are capped to one per worker during parallel execution to avoid CPU oversubscription.
    • Sequential execution remains the default when num_cores = 1.
  • Improved documentation clarity around parallel execution, verbosity, and model fit history storage.

bifrost 0.1.0

• Initial CRAN submission.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.