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The goal of betaclust is to appositely model the beta-valued cytosine-guanine dinucleotide (CpG) sites, to objectively identify methylation state thresholds and to identify the differentially methylated CpG (DMC) sites using a model-based clustering approach. The family of BMMs employs different parameter constraints applicable to different study settings. The EM algorithm is used for parameter estimation, with a novel approximation during the M-step providing tractability and ensuring computational feasibility.
You can install the development version of betaclust like so:
library(devtools)
install_github('koyelucd/betaclust',force = TRUE)
library(betaclust)These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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