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beautier: 'BEAUti' from R

'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAUti 2' (which is part of 'BEAST2') is a GUI tool that allows users to specify the many possible setups and generates the XML file 'BEAST2' needs to run. This package provides a way to create 'BEAST2' input files without active user input, but using R function calls instead.

Version: 2.6.12
Imports: ape, rappdirs, purrr, rlang (≥ 1.1.0), seqinr, stringr
Suggests: knitr, markdown, readr, rmarkdown, testthat (≥ 2.1.0)
Published: 2024-04-01
Author: Richèl J.C. Bilderbeek ORCID iD [aut, cre], Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209), David Winter [rev] (David reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209), Paul Van Els ORCID iD [ctb], Raphael Scherrer ORCID iD [ctb], Yacine B. Chehida ORCID iD [ctb], Katharine S. Walter ORCID iD [ctb], Gary Napier ORCID iD [ctb], Jason Griffiths ORCID iD [ctb], Thijs Janzen ORCID iD [ctb], Pedro Taucce ORCID iD [ctb], Olivier Roy [ctb], Jana Riederer ORCID iD [ctb]
Maintainer: Richèl J.C. Bilderbeek <rjcbilderbeek at gmail.com>
BugReports: https://github.com/ropensci/beautier/issues
License: GPL-3
URL: https://docs.ropensci.org/beautier/, https://github.com/ropensci/beautier
NeedsCompilation: no
Language: en-US
Citation: beautier citation info
In views: Phylogenetics
CRAN checks: beautier results

Documentation:

Reference manual: beautier.pdf
Vignettes: beautier demo
Examples
Inference Models

Downloads:

Package source: beautier_2.6.12.tar.gz
Windows binaries: r-devel: beautier_2.6.12.zip, r-release: beautier_2.6.12.zip, r-oldrel: beautier_2.6.12.zip
macOS binaries: r-release (arm64): beautier_2.6.12.tgz, r-oldrel (arm64): beautier_2.6.12.tgz, r-release (x86_64): beautier_2.6.12.tgz, r-oldrel (x86_64): beautier_2.6.12.tgz
Old sources: beautier archive

Reverse dependencies:

Reverse imports: beastier, nodeSub

Linking:

Please use the canonical form https://CRAN.R-project.org/package=beautier to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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