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bayestransmission 0.1.0

CRAN Resubmission Changes

• Changed \dontrun{} to \donttest{} in documentation examples per CRAN feedback
• Implemented conditional compilation to reduce package size by 6% (36.3 MB → 34 MB)
• Moved development C++ code out of installed package

New Features

• Conditional Compilation System: Three-tier build configuration
  • Default build exposes 8 critical C++ classes (34 MB)
  • Comprehensive testing build adds 8 testing classes (38 MB)
    
  • Full build adds 7 additional diagnostic classes (42 MB)
  • Added getExposureFlags() to query build configuration at runtime
• Enhanced Testing: Comprehensive test suite with conditional skipping
  • Test helpers: skip_if_not_exposed() and skip_if_method_not_available()
  • 304 tests pass, 38 appropriately skip in minimal build
  • Full coverage of MCMC, likelihood computation, and model creation

Bug Fixes

• Fixed potential segfaults in SystemHistory container access methods
• Improved memory management with shared_ptr caching for Map/IntMap objects

Internal Changes

• Reorganized C++ class exposure into logical tiers
• Added stub functions for conditionally compiled exports with informative errors
• Reduced Rcpp template instantiation by ~65%
• Cleaned up package structure (moved original_cpp out of inst/)

bayestransmission 0.0.0.9000

• Initial CRAN submission.
• Added Bayesian inference methods for infectious disease transmission models.
• Implemented MCMC algorithms for estimating transmission parameters.
• Added support for multiple model types including LogNormal and LinearAbx models.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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