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babelgene: Gene Orthologs for Model Organisms in a Tidy Data Format

Genomic analysis of model organisms frequently requires the use of databases based on human data or making comparisons to patient-derived resources. This requires harmonization of gene names into the same gene space. The 'babelgene' R package converts between human and non-human gene orthologs/homologs. The package integrates orthology assertion predictions sourced from multiple databases as compiled by the HGNC Comparison of Orthology Predictions (HCOP) (Wright et al. 2005 <doi:10.1007/s00335-005-0103-2>, Eyre et al. 2007 <doi:10.1093/bib/bbl030>, Seal et al. 2011 <doi:10.1093/nar/gkq892>).

Version: 22.9
Depends: R (≥ 3.4)
Imports: dplyr, methods, rlang
Suggests: covr, knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2022-09-29
DOI: 10.32614/CRAN.package.babelgene
Author: Igor Dolgalev ORCID iD [aut, cre]
Maintainer: Igor Dolgalev <igor.dolgalev at nyumc.org>
BugReports: https://github.com/igordot/babelgene/issues
License: MIT + file LICENSE
URL: https://igordot.github.io/babelgene/
NeedsCompilation: no
Materials: README NEWS
In views: Omics
CRAN checks: babelgene results

Documentation:

Reference manual: babelgene.pdf
Vignettes: Introduction to babelgene

Downloads:

Package source: babelgene_22.9.tar.gz
Windows binaries: r-devel: babelgene_22.9.zip, r-release: babelgene_22.9.zip, r-oldrel: babelgene_22.9.zip
macOS binaries: r-release (arm64): babelgene_22.9.tgz, r-oldrel (arm64): babelgene_22.9.tgz, r-release (x86_64): babelgene_22.9.tgz, r-oldrel (x86_64): babelgene_22.9.tgz
Old sources: babelgene archive

Reverse dependencies:

Reverse imports: msigdbr, orthogene, sparrow

Linking:

Please use the canonical form https://CRAN.R-project.org/package=babelgene to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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