babelgene: Gene Orthologs for Model Organisms in a Tidy Data Format

Genomic analysis of model organisms frequently requires the use of databases based on human data or making comparisons to patient-derived resources. This requires harmonization of gene names into the same gene space. The 'babelgene' R package converts between human and non-human gene orthologs/homologs. The package integrates orthology assertion predictions sourced from multiple databases as compiled by the HGNC Comparison of Orthology Predictions (HCOP) (Wright et al. 2005 <doi:10.1007/s00335-005-0103-2>, Eyre et al. 2007 <doi:10.1093/bib/bbl030>, Seal et al. 2011 <doi:10.1093/nar/gkq892>).

Version:	22.9
Depends:	R (≥ 3.4)
Imports:	dplyr, methods, rlang
Suggests:	covr, knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2022-09-29
Author:	Igor Dolgalev [aut, cre]
Maintainer:	Igor Dolgalev <igor.dolgalev at nyumc.org>
BugReports:	https://github.com/igordot/babelgene/issues
License:	MIT + file LICENSE
URL:	https://igordot.github.io/babelgene/
NeedsCompilation:	no
Materials:	README NEWS
In views:	Omics
CRAN checks:	babelgene results

Documentation:

Reference manual:	babelgene.pdf
Vignettes:	Introduction to babelgene

Downloads:

Package source:	babelgene_22.9.tar.gz
Windows binaries:	r-devel: babelgene_22.9.zip, r-release: babelgene_22.9.zip, r-oldrel: babelgene_22.9.zip
macOS binaries:	r-release (arm64): babelgene_22.9.tgz, r-oldrel (arm64): babelgene_22.9.tgz, r-release (x86_64): babelgene_22.9.tgz, r-oldrel (x86_64): babelgene_22.9.tgz
Old sources:	babelgene archive

Reverse dependencies:

Reverse imports:

msigdbr, orthogene, sparrow

Linking:

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