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apex: Phylogenetic Methods for Multiple Gene Data

Toolkit for the analysis of multiple gene data (Jombart et al. 2017) <doi:10.1111/1755-0998.12567>. 'apex' implements the new S4 classes 'multidna', 'multiphyDat' and associated methods to handle aligned DNA sequences from multiple genes.

Version: 1.0.6
Depends: R (≥ 3.1.3), methods, ape, phangorn
Imports: utils, graphics, stats, adegenet
Suggests: testthat, knitr, rmarkdown
Published: 2024-01-31
DOI: 10.32614/CRAN.package.apex
Author: Klaus Schliep ORCID iD [aut, cre], Thibaut Jombart [aut], Zhian Namir Kamvar [aut], Eric Archer [aut], Rebecca Harris [aut]
Maintainer: Klaus Schliep <klaus.schliep at gmail.com>
BugReports: https://github.com/thibautjombart/apex/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/thibautjombart/apex
NeedsCompilation: no
Materials: README NEWS
In views: Phylogenetics
CRAN checks: apex results

Documentation:

Reference manual: apex.pdf
Vignettes: apex: Phylogenetic Methods for Multiple Gene Data.

Downloads:

Package source: apex_1.0.6.tar.gz
Windows binaries: r-devel: apex_1.0.6.zip, r-release: apex_1.0.6.zip, r-oldrel: apex_1.0.6.zip
macOS binaries: r-release (arm64): apex_1.0.6.tgz, r-oldrel (arm64): apex_1.0.6.tgz, r-release (x86_64): apex_1.0.6.tgz, r-oldrel (x86_64): apex_1.0.6.tgz
Old sources: apex archive

Reverse dependencies:

Reverse suggests: phangorn

Linking:

Please use the canonical form https://CRAN.R-project.org/package=apex to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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