amanida: Meta-Analysis for Non-Integral Data

Combination of results for meta-analysis using significance and effect size only. P-values and fold-change are combined to obtain a global significance on each metabolite. Produces a volcano plot summarising the relevant results from meta-analysis. Vote-counting reports for metabolites. And explore plot to detect discrepancies between studies at a first glance. Methodology is described in the Llambrich et al. (2021) <doi:10.1093/bioinformatics/btab591>.

Version:	0.3.0
Depends:	R (≥ 4.1)
Imports:	dplyr (≥ 1.0.0), ggplot2 (≥ 3.3.0), ggrepel (≥ 0.9.0), kableExtra (≥ 1.3.0), knitr (≥ 1.45), magrittr (≥ 1.5), methods (≥ 3.6.0), readr (≥ 1.0.0), readxl (≥ 1.0.0), rmarkdown (≥ 2.25), stats (≥ 3.6.0), tibble (≥ 3.0.0), tidyr (≥ 1.1.0), tidyverse (≥ 1.3.0), webchem (≥ 1.1.0)
Suggests:	markdown, metaboliteIDmapping, testthat, vdiffr
Published:	2024-01-26
DOI:	10.32614/CRAN.package.amanida
Author:	Maria Llambrich [aut, cre], Eudald Correig [aut], Raquel Cumeras [aut]
Maintainer:	Maria Llambrich <maria.llambrich at urv.cat>
License:	GPL-3
URL:	https://github.com/mariallr/amanida
NeedsCompilation:	no
Materials:	README
In views:	MetaAnalysis
CRAN checks:	amanida results

Documentation:

Reference manual:	amanida.pdf
Vignettes:	amanida_UserGuide

Downloads:

Package source:	amanida_0.3.0.tar.gz
Windows binaries:	r-devel: amanida_0.3.0.zip, r-release: amanida_0.3.0.zip, r-oldrel: amanida_0.3.0.zip
macOS binaries:	r-release (arm64): amanida_0.3.0.tgz, r-oldrel (arm64): amanida_0.3.0.tgz, r-release (x86_64): amanida_0.3.0.tgz, r-oldrel (x86_64): amanida_0.3.0.tgz
Old sources:	amanida archive

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