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amanida: Meta-Analysis for Non-Integral Data

Combination of results for meta-analysis using significance and effect size only. P-values and fold-change are combined to obtain a global significance on each metabolite. Produces a volcano plot summarising the relevant results from meta-analysis. Vote-counting reports for metabolites. And explore plot to detect discrepancies between studies at a first glance. Methodology is described in the Llambrich et al. (2021) <doi:10.1093/bioinformatics/btab591>.

Version: 0.3.0
Depends: R (≥ 4.1)
Imports: dplyr (≥ 1.0.0), ggplot2 (≥ 3.3.0), ggrepel (≥ 0.9.0), kableExtra (≥ 1.3.0), knitr (≥ 1.45), magrittr (≥ 1.5), methods (≥ 3.6.0), readr (≥ 1.0.0), readxl (≥ 1.0.0), rmarkdown (≥ 2.25), stats (≥ 3.6.0), tibble (≥ 3.0.0), tidyr (≥ 1.1.0), tidyverse (≥ 1.3.0), webchem (≥ 1.1.0)
Suggests: markdown, metaboliteIDmapping, testthat, vdiffr
Published: 2024-01-26
DOI: 10.32614/CRAN.package.amanida
Author: Maria Llambrich ORCID iD [aut, cre], Eudald Correig [aut], Raquel Cumeras [aut]
Maintainer: Maria Llambrich <maria.llambrich at urv.cat>
License: GPL-3
URL: https://github.com/mariallr/amanida
NeedsCompilation: no
Materials: README
In views: MetaAnalysis
CRAN checks: amanida results

Documentation:

Reference manual: amanida.pdf
Vignettes: amanida_UserGuide

Downloads:

Package source: amanida_0.3.0.tar.gz
Windows binaries: r-devel: amanida_0.3.0.zip, r-release: amanida_0.3.0.zip, r-oldrel: amanida_0.3.0.zip
macOS binaries: r-release (arm64): amanida_0.3.0.tgz, r-oldrel (arm64): amanida_0.3.0.tgz, r-release (x86_64): amanida_0.3.0.tgz, r-oldrel (x86_64): amanida_0.3.0.tgz
Old sources: amanida archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=amanida to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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