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Queries multiple resources authors HGNC (2019) <https://www.genenames.org>, authors limma (2015) <doi:10.1093/nar/gkv007> to find the correspondence between evolving nomenclature of human gene symbols, aliases, previous symbols or synonyms with stable, curated gene entrezID from NCBI database. This allows fast, accurate and up-to-date correspondence between human gene expression datasets from various date and platform (e.g: gene symbol: BRCA1 - ID: 672).
| Version: | 0.1.2 |
| Imports: | doParallel, limma, utils, org.Hs.eg.db, AnnotationDbi, parallel, foreach, readr, RCurl |
| Suggests: | spelling |
| Published: | 2021-02-15 |
| DOI: | 10.32614/CRAN.package.aliases2entrez |
| Author: | Raphael Bonnet [aut, cre] (Université Côte d’Azur), Lee Mariault [ctb] (Université Côte d’Azur), Jean-François Peyron [aut] (Inserm) |
| Maintainer: | Raphael Bonnet <raphael.bonnet at univ-cotedazur.fr> |
| BugReports: | https://github.com/peyronlab/aliases2entrez/issues |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | NEWS |
| In views: | Omics |
| CRAN checks: | aliases2entrez results |
| Reference manual: | aliases2entrez.pdf |
| Package source: | aliases2entrez_0.1.2.tar.gz |
| Windows binaries: | r-devel: aliases2entrez_0.1.2.zip, r-release: aliases2entrez_0.1.2.zip, r-oldrel: aliases2entrez_0.1.2.zip |
| macOS binaries: | r-release (arm64): aliases2entrez_0.1.2.tgz, r-oldrel (arm64): aliases2entrez_0.1.2.tgz, r-release (x86_64): aliases2entrez_0.1.2.tgz, r-oldrel (x86_64): aliases2entrez_0.1.2.tgz |
| Old sources: | aliases2entrez archive |
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