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Converts pathways from 'WikiPathways' GPML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).
| Version: | 0.1.2 |
| Depends: | R (≥ 3.5) |
| Imports: | graphics, utils, XML, igraph |
| Suggests: | knitr, rmarkdown, Polychrome |
| Published: | 2024-04-10 |
| DOI: | 10.32614/CRAN.package.WayFindR |
| Author: | Kevin R. Coombes [aut, cre], Polina Bombina [aut] |
| Maintainer: | Kevin R. Coombes <krc at silicovore.com> |
| License: | Artistic-2.0 |
| URL: | http://oompa.r-forge.r-project.org/ |
| NeedsCompilation: | no |
| CRAN checks: | WayFindR results |
| Reference manual: | WayFindR.pdf |
| Vignettes: |
WayFindR: Creating Graph Structures From WikiPathways Files WayFindR: Computing Graph Metrics on WikiPathways |
| Package source: | WayFindR_0.1.2.tar.gz |
| Windows binaries: | r-devel: WayFindR_0.1.2.zip, r-release: WayFindR_0.1.2.zip, r-oldrel: WayFindR_0.1.2.zip |
| macOS binaries: | r-release (arm64): WayFindR_0.1.2.tgz, r-oldrel (arm64): WayFindR_0.1.2.tgz, r-release (x86_64): WayFindR_0.1.2.tgz, r-oldrel (x86_64): WayFindR_0.1.2.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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