The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

TidyMultiqc

TidyMultiqc Provides the means to convert ‘multiqc_data.json’ files, produced by the wonderful ‘MultiQC’ tool, into tidy data frames for downstream analysis in R.

Please visit the pkgdown website for a comprehensive tutorial and function documentation.

Installation

The latest stable version can be installed from CRAN:

install.packages("TidyMultiqc")

You can also install the development version of TidyMultiqc from GitHub with:

# install.packages("devtools")
devtools::install_github("multimeric/TidyMultiqc")

Example

TidyMultiqc::load_multiqc(multiqc_data_path)
#> # A tibble: 6 × 165
#>   metadata.sample_id general.total_reads general.mapped_reads general.percentag…
#>   <chr>                            <dbl>                <dbl>              <dbl>
#> 1 P4107_1003                   868204107            847562410               97.6
#> 2 P4107_1004                  1002828927            985115356               98.2
#> 3 P4107_1005                   974955793            955921317               98.0
#> 4 P4107_1002                   865975844            847067526               97.8
#> 5 P4107_1006                   912383669            894970438               98.1
#> 6 P4107_1001                   772071557            751147332               97.3
#> # … with 161 more variables: general.median_coverage <int>,
#> #   general.median_insert_size <int>, general.avg_gc <dbl>,
#> #   general.1_x_pc <dbl>, general.5_x_pc <dbl>, general.10_x_pc <dbl>,
#> #   general.30_x_pc <dbl>, general.50_x_pc <dbl>, general.genome <chr>,
#> #   general.number_of_variants_before_filter <dbl>,
#> #   general.number_of_known_variants_brie_non_empty_id <dbl>,
#> #   general.number_of_known_variants_brie_non_empty_id_percent <dbl>, …

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.