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TPAC: Tissue-Adjusted Pathway Analysis of Cancer (TPAC)

Contains logic for single sample gene set testing of cancer transcriptomic data with adjustment for normal tissue-specificity. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.

Version: 0.2.0
Depends: R (≥ 3.6.0)
Imports: data.table, MASS, TPACData
Published: 2023-10-26
DOI: 10.32614/CRAN.package.TPAC
Author: H. Robert Frost [aut, cre]
Maintainer: H. Robert Frost <rob.frost at dartmouth.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: NEWS
CRAN checks: TPAC results

Documentation:

Reference manual: TPAC.pdf
Vignettes: TCGA liver cancer using MSigDB Hallmark collection example

Downloads:

Package source: TPAC_0.2.0.tar.gz
Windows binaries: r-devel: TPAC_0.2.0.zip, r-release: TPAC_0.2.0.zip, r-oldrel: TPAC_0.2.0.zip
macOS binaries: r-release (arm64): TPAC_0.2.0.tgz, r-oldrel (arm64): TPAC_0.2.0.tgz, r-release (x86_64): TPAC_0.2.0.tgz, r-oldrel (x86_64): TPAC_0.2.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=TPAC to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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