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The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.
| Version: | 0.1-2 |
| Depends: | R (≥ 3.1.2), deSolve |
| Imports: | parallel |
| Published: | 2015-10-26 |
| DOI: | 10.32614/CRAN.package.TDCor |
| Author: | Julien Lavenus |
| Maintainer: | Mikael Lucas <mikael.lucas at ird.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | TDCor results |
| Reference manual: | TDCor.pdf |
| Package source: | TDCor_0.1-2.tar.gz |
| Windows binaries: | r-devel: TDCor_0.1-2.zip, r-release: TDCor_0.1-2.zip, r-oldrel: TDCor_0.1-2.zip |
| macOS binaries: | r-release (arm64): TDCor_0.1-2.tgz, r-oldrel (arm64): TDCor_0.1-2.tgz, r-release (x86_64): TDCor_0.1-2.tgz, r-oldrel (x86_64): TDCor_0.1-2.tgz |
| Old sources: | TDCor archive |
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