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SlimR 1.0.7 (2025-08-19)

• Added new function Celltype_Verification() for predicted cell types validation and generate the validation dotplot.
• Optimize the function ‘Read_seurat_markers()’. This is compatible with the ‘presto::wilcoxauc()’ source tag, and the ‘Feature Significance Score’ (FSS, product value of log2FC and Expression ratio) can be calculated and sorted accordingly.
• Add custom color parameters colour_low and colour_high to all ploting output functions.
• Renamed Celltype_annotation_Dotplot() to Celltype_Annotation_Features(), Celltype_annotation_Box() to Celltype_Annotation_Combined(), read_seurat_markers() to Read_seurat_markers(), read_excel_markers() to Read_excel_markers() for unified function naming structure.
• Enhanced README with detailed process descriptions.
• Optimized message output system for cleaner console feedback.
• Resolved various code bugs reported by users.
• Modified codebase to meet CRAN standards and policies.

SlimR 1.0.6 (2025-08-06)

• Integrated “scIBD” human intestine reference database.
• Added AUC calculation and visualization to Celltype_Calculate().
• Implemented AUC-based prediction correction in cell typing.
• Streamlined code output formatting.
• Fixed critical bugs in prediction pipeline.
• Modified code to meet CRAN submission requirements.

SlimR 1.0.5 (2025-08-05)

• Added “TCellSI” T-cell reference database.
• Introduced Celltype_Calculate() for automated scoring.
• Added Celltype_Annotation() for end-to-end cell typing.
• Improved message output system.
• Resolved multiple code errors.
• Modified code to meet CRAN standards and policies.

SlimR 1.0.4 (2025-07-30)

• Optimized Celltype_annotation_Heatmap() performance.
• Enhanced probability calculation in calculate_probability().
• Modified code to meet CRAN submission requirements.
• Change the License type from “GPL-3” to “MIT”.

SlimR 1.0.3 (2025-07-28)

• Replaced calculate_mean_expression() with calculate_probability() in Celltype_annotation_Heatmap().
• Modified code to meet CRAN standards and policies.

SlimR 1.0.1 (2025-07-19)

• Changed Celltype_annotation_Bar() to Celltype_annotation_Box() with improved visualization capabilities.

SlimR 1.0.0 (2025-07-07)

• Initial release of SlimR package with core cell type annotation framework and basic visualization functions.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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