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SexSeek: Estimate Genetic Sex from Expression Counts
Infers the genetic sex of samples, donors or cells from bulk or
single-cell RNA sequencing counts. Accepts dense or sparse
matrices, delimited text files, 10x Genomics outputs, and 'Seurat',
'SingleCellExperiment' and 'SummarizedExperiment' objects.
| Version: |
0.1.0 |
| Depends: |
R (≥ 4.1) |
| Imports: |
ggplot2, Matrix, methods, stats, utils |
| Suggests: |
genevintage (≥ 0.1.3), hdf5r, knitr, rmarkdown, SeuratObject, SingleCellExperiment, SummarizedExperiment, testthat (≥ 3.0.0) |
| Published: |
2026-11-03 |
| DOI: |
10.32614/CRAN.package.SexSeek |
| Author: |
Saket Choudhary 
[aut, cre, cph] |
| Maintainer: |
Saket Choudhary <saketc at iitb.ac.in> |
| BugReports: |
https://github.com/saketlab/SexSeek/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://sexseek.saketlab.org, https://github.com/saketlab/SexSeek |
| NeedsCompilation: |
no |
| Language: |
en-GB |
| Materials: |
README, NEWS |
| CRAN checks: |
SexSeek results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=SexSeek
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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