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A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.
| Version: | 0.1.2 |
| Depends: | R (≥ 4.1.0), shiny |
| Imports: | utils, tools, stats, methods, Seurat (≥ 5.4.0), SeuratObject (≥ 5.3.0), ggplot2 (≥ 4.0.1), shinydashboard, shinydashboardPlus, DT, shinycssloaders, patchwork (≥ 1.3.2), colourpicker, shinyWidgets, scales, shinyjqui, shinyBS, ggalluvial, dplyr, qs2, circlize, reshape2, knitr, markdown |
| Suggests: | ComplexHeatmap, MAST, limma, DESeq2, Signac |
| Published: | 2026-01-19 |
| DOI: | 10.32614/CRAN.package.SeuratExplorer |
| Author: | Yongchao Zhang [aut, cre] (https://github.com/fentouxungui) |
| Maintainer: | Yongchao Zhang <zhangyongchao at nibs.ac.cn> |
| BugReports: | https://github.com/fentouxungui/SeuratExplorer/issues |
| License: | GPL (≥ 3) |
| URL: | https://CRAN.R-project.org/package=SeuratExplorer, https://github.com/fentouxungui/SeuratExplorer |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | SeuratExplorer results |
| Reference manual: | SeuratExplorer.html , SeuratExplorer.pdf |
| Package source: | SeuratExplorer_0.1.2.tar.gz |
| Windows binaries: | r-devel: SeuratExplorer_0.1.2.zip, r-release: SeuratExplorer_0.1.0.zip, r-oldrel: SeuratExplorer_0.1.0.zip |
| macOS binaries: | r-release (arm64): SeuratExplorer_0.1.2.tgz, r-oldrel (arm64): SeuratExplorer_0.1.2.tgz, r-release (x86_64): SeuratExplorer_0.1.2.tgz, r-oldrel (x86_64): SeuratExplorer_0.1.2.tgz |
| Old sources: | SeuratExplorer archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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