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STDistance: Spatial Transcriptomics Distance Calculation and Visualization

Analysis of spatial relationships between cell types in spatial transcriptomics data. Spatial proximity is a critical factor in cell-cell communication. The package calculates nearest neighbor distances between specified cell types and provides visualization tools to explore spatial patterns. Applications include studying cell-cell interactions, immune microenvironment characterization, and spatial organization of tissues.

Version: 0.6.4
Depends: R (≥ 4.0.0)
Imports: dplyr, ggplot2, Hmisc, scales, stats, RColorBrewer, tidyr
Suggests: testthat, knitr, rmarkdown
Published: 2025-06-18
DOI: 10.32614/CRAN.package.STDistance
Author: Zixiang Wang ORCID iD [aut, cre], Lei Yang [aut], Zhaojian Liu [aut]
Maintainer: Zixiang Wang <wangzixiang at sdu.edu.cn>
License: GPL (≥ 3)
NeedsCompilation: no
Materials: README
CRAN checks: STDistance results

Documentation:

Reference manual: STDistance.pdf
Vignettes: my-vignette (source, R code)

Downloads:

Package source: STDistance_0.6.4.tar.gz
Windows binaries: r-devel: STDistance_0.6.4.zip, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): STDistance_0.6.4.tgz, r-oldrel (arm64): STDistance_0.6.4.tgz, r-release (x86_64): STDistance_0.6.4.tgz, r-oldrel (x86_64): STDistance_0.6.4.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=STDistance to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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