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SOHPIE: Statistical Approach via Pseudo-Value Information and Estimation

'SOHPIE' (pronounced as SOFIE) is a novel pseudo-value regression approach for differential co-abundance network analysis of microbiome data, which can include additional clinical covariate in the model. The full methodological details can be found in Ahn S and Datta S (2023) <doi:10.48550/arXiv.2303.13702>.

Version: 1.0.6
Depends: R (≥ 3.5.0)
Imports: robustbase, parallel, dplyr, fdrtool, gtools, stats
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2023-10-23
DOI: 10.32614/CRAN.package.SOHPIE
Author: Seungjun Ahn ORCID iD [cre, aut, trl], Somnath Datta [ctb, ths]
Maintainer: Seungjun Ahn <seungjun.ahn at mountsinai.org>
License: GPL-3
NeedsCompilation: no
Language: en-US
CRAN checks: SOHPIE results

Documentation:

Reference manual: SOHPIE.pdf
Vignettes: An Introduction to SOHPIE

Downloads:

Package source: SOHPIE_1.0.6.tar.gz
Windows binaries: r-devel: SOHPIE_1.0.6.zip, r-release: SOHPIE_1.0.6.zip, r-oldrel: SOHPIE_1.0.6.zip
macOS binaries: r-release (arm64): SOHPIE_1.0.6.tgz, r-oldrel (arm64): SOHPIE_1.0.6.tgz, r-release (x86_64): SOHPIE_1.0.6.tgz, r-oldrel (x86_64): SOHPIE_1.0.6.tgz
Old sources: SOHPIE archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=SOHPIE to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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