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'SOHPIE' (pronounced as SOFIE) is a novel pseudo-value regression approach for differential co-abundance network analysis of microbiome data, which can include additional clinical covariate in the model. The full methodological details can be found in Ahn S and Datta S (2023) <doi:10.48550/arXiv.2303.13702>.
Version: | 1.0.6 |
Depends: | R (≥ 3.5.0) |
Imports: | robustbase, parallel, dplyr, fdrtool, gtools, stats |
Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
Published: | 2023-10-23 |
DOI: | 10.32614/CRAN.package.SOHPIE |
Author: | Seungjun Ahn |
Maintainer: | Seungjun Ahn <seungjun.ahn at mountsinai.org> |
License: | GPL-3 |
NeedsCompilation: | no |
Language: | en-US |
CRAN checks: | SOHPIE results |
Reference manual: | SOHPIE.pdf |
Vignettes: |
An Introduction to SOHPIE |
Package source: | SOHPIE_1.0.6.tar.gz |
Windows binaries: | r-devel: SOHPIE_1.0.6.zip, r-release: SOHPIE_1.0.6.zip, r-oldrel: SOHPIE_1.0.6.zip |
macOS binaries: | r-release (arm64): SOHPIE_1.0.6.tgz, r-oldrel (arm64): SOHPIE_1.0.6.tgz, r-release (x86_64): SOHPIE_1.0.6.tgz, r-oldrel (x86_64): SOHPIE_1.0.6.tgz |
Old sources: | SOHPIE archive |
Please use the canonical form https://CRAN.R-project.org/package=SOHPIE to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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