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SMITIDstruct: Data Structure and Manipulations Tool for Host and Viral Population

Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID). It allow sequence-space-time host and viral population data storage, indexation and querying.

Version: 0.0.5
Depends: methods, utils, grDevices (≥ 3.0.0), graphics (≥ 3.0.0), R (≥ 3.3.0)
Imports: ggplot2, sf (≥ 0.6.3), stats (≥ 3.0.2), Biostrings (≥ 2.0.0)
Suggests: testthat (≥ 2.0)
Published: 2019-06-14
DOI: 10.32614/CRAN.package.SMITIDstruct
Author: Jean-Francois Rey [aut, cre]
Maintainer: Jean-Francois Rey <jean-francois.rey at inra.fr>
BugReports: https://gitlab.paca.inra.fr/SMITID/structR/issues
License: GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE]
URL: https://informatique-mia.inra.fr/biosp/anr-smitid-project, https://gitlab.paca.inra.fr/SMITID/structR
NeedsCompilation: no
CRAN checks: SMITIDstruct results

Documentation:

Reference manual: SMITIDstruct.pdf

Downloads:

Package source: SMITIDstruct_0.0.5.tar.gz
Windows binaries: r-devel: SMITIDstruct_0.0.5.zip, r-release: SMITIDstruct_0.0.5.zip, r-oldrel: SMITIDstruct_0.0.5.zip
macOS binaries: r-release (arm64): SMITIDstruct_0.0.5.tgz, r-oldrel (arm64): SMITIDstruct_0.0.5.tgz, r-release (x86_64): SMITIDstruct_0.0.5.tgz, r-oldrel (x86_64): SMITIDstruct_0.0.5.tgz
Old sources: SMITIDstruct archive

Reverse dependencies:

Reverse suggests: SMITIDvisu

Linking:

Please use the canonical form https://CRAN.R-project.org/package=SMITIDstruct to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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