The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Streamlined workflow from deconvolution of bulk RNA-seq data to downstream differential expression and gene-set enrichment analysis. Provide various visualization functions.
| Version: | 1.0.0 |
| Depends: | dplyr, edgeR, foreach, ggplot2, R (≥ 2.10), Seurat |
| Imports: | data.table, gtools, harmony, MASS, Matrix, NMF, reshape2, Biobase, mgcv, grDevices, glmGamPoi |
| Suggests: | FARDEEP, reticulate, plotly, DESeq2, knitr, limma, nnls, preprocessCore, rmarkdown, scater, scran, SingleCellExperiment, doFuture, future, sctransform, Linnorm |
| Published: | 2024-03-22 |
| DOI: | 10.32614/CRAN.package.SCdeconR |
| Author: | Yuanhang Liu [aut, cre] |
| Maintainer: | Yuanhang Liu <liu.yuanhang at mayo.edu> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/Liuy12/SCdeconR/, https://liuy12.github.io/SCdeconR/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | SCdeconR results |
| Reference manual: | SCdeconR.pdf |
| Package source: | SCdeconR_1.0.0.tar.gz |
| Windows binaries: | r-devel: SCdeconR_1.0.0.zip, r-release: SCdeconR_1.0.0.zip, r-oldrel: SCdeconR_1.0.0.zip |
| macOS binaries: | r-release (arm64): SCdeconR_1.0.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): SCdeconR_1.0.0.tgz, r-oldrel (x86_64): not available |
Please use the canonical form https://CRAN.R-project.org/package=SCdeconR to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.