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SCINA: A Semi-Supervised Category Identification and Assignment Tool

An automatic cell type detection and assignment algorithm for single cell RNA-Seq and Cytof/FACS data. 'SCINA' is capable of assigning cell type identities to a pool of cells profiled by scRNA-Seq or Cytof/FACS data with prior knowledge of markers, such as genes and protein symbols that are highly or lowly expressed in each category. See Zhang Z, et al (2019) <doi:10.3390/genes10070531> for more details.

Version: 1.2.0
Depends: R (≥ 2.15.0), MASS, gplots
Published: 2019-07-18
DOI: 10.32614/CRAN.package.SCINA
Author: Ze Zhang
Maintainer: Ze Zhang <Ze.Zhang at utsouthwestern.edu>
License: GPL-2
URL: http://lce.biohpc.swmed.edu/scina/ https://github.com/jcao89757/SCINA
NeedsCompilation: no
Materials: NEWS
CRAN checks: SCINA results

Documentation:

Reference manual: SCINA.pdf

Downloads:

Package source: SCINA_1.2.0.tar.gz
Windows binaries: r-devel: SCINA_1.2.0.zip, r-release: SCINA_1.2.0.zip, r-oldrel: SCINA_1.2.0.zip
macOS binaries: r-release (arm64): SCINA_1.2.0.tgz, r-oldrel (arm64): SCINA_1.2.0.tgz, r-release (x86_64): SCINA_1.2.0.tgz, r-oldrel (x86_64): SCINA_1.2.0.tgz
Old sources: SCINA archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=SCINA to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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