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SAVER: Single-Cell RNA-Seq Gene Expression Recovery

An implementation of a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data. See Huang M, et al (2018) <doi:10.1038/s41592-018-0033-z> for more details.

Version: 1.1.2
Depends: R (≥ 3.0.1)
Imports: glmnet, foreach, methods, iterators, doParallel, Matrix
Suggests: knitr, rmarkdown
Published: 2019-11-13
DOI: 10.32614/CRAN.package.SAVER
Author: Mo Huang [aut, cre], Nancy Zhang [aut], Mingyao Li [aut]
Maintainer: Mo Huang <mohuangx at gmail.com>
BugReports: https://github.com/mohuangx/SAVER/issues
License: GPL-2
URL: https://github.com/mohuangx/SAVER
NeedsCompilation: no
Citation: SAVER citation info
Materials: README NEWS
In views: MissingData
CRAN checks: SAVER results

Documentation:

Reference manual: SAVER.pdf
Vignettes: SAVER Tutorial

Downloads:

Package source: SAVER_1.1.2.tar.gz
Windows binaries: r-devel: SAVER_1.1.2.zip, r-release: SAVER_1.1.2.zip, r-oldrel: SAVER_1.1.2.zip
macOS binaries: r-release (arm64): SAVER_1.1.2.tgz, r-oldrel (arm64): SAVER_1.1.2.tgz, r-release (x86_64): SAVER_1.1.2.tgz, r-oldrel (x86_64): SAVER_1.1.2.tgz
Old sources: SAVER archive

Reverse dependencies:

Reverse imports: ADImpute, scRecover

Linking:

Please use the canonical form https://CRAN.R-project.org/package=SAVER to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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