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Process phylogenetic trees with tropical support vector machine and principal component analysis defined with tropical geometry. Details about tropical support vector machine are available in : Tang, X., Wang, H. & Yoshida, R. (2020) <doi:10.48550/arXiv.2003.00677>. Details about tropical principle component analysis are available in : Page, R., Yoshida, R. & Zhang L. (2020) <doi:10.1093/bioinformatics/btaa564> and Yoshida, R., Zhang, L. & Zhang, X. (2019) <doi:10.1007/s11538-018-0493-4>.
| Version: | 1.2.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ape, lpSolve, lpSolveAPI, parallel, Rfast, RcppAlgos, caret |
| Suggests: | rmarkdown, knitr, e1071, testthat (≥ 3.0.0) |
| Published: | 2021-11-09 |
| DOI: | 10.32614/CRAN.package.Rtropical |
| Author: | Houjie Wang [aut, cre], Kaizhang Wang [aut], Grady Weyenberg [aut], Xiaoxian Tang [aut], Ruriko Yoshida [aut] |
| Maintainer: | Houjie Wang <wanghoujie6688 at gmail.com> |
| License: | GPL-3 |
| URL: | https://github.com/HoujieWang/Rtropical |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | Rtropical results |
| Reference manual: | Rtropical.pdf |
| Vignettes: |
usage |
| Package source: | Rtropical_1.2.1.tar.gz |
| Windows binaries: | r-devel: Rtropical_1.2.1.zip, r-release: Rtropical_1.2.1.zip, r-oldrel: Rtropical_1.2.1.zip |
| macOS binaries: | r-release (arm64): Rtropical_1.2.1.tgz, r-oldrel (arm64): Rtropical_1.2.1.tgz, r-release (x86_64): Rtropical_1.2.1.tgz, r-oldrel (x86_64): Rtropical_1.2.1.tgz |
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