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Applies a given global-fit method to random partial tanglegrams of a fixed size to identify the associations, terminals, and nodes that maximize phylogenetic (in)congruence. It also includes functions to compute more easily the confidence intervals of classification metrics and plot results, reducing computational time. See Llaberia-Robledillo et al., (2023) <doi:10.1093/sysbio/syad016>.
Version: | 1.2 |
Depends: | phytools, parallel, R (≥ 3.5.0) |
Imports: | ape, distory, paco, parallelly, stats, stringr, vegan |
Suggests: | testthat (≥ 3.2.1.1) |
Published: | 2024-06-13 |
DOI: | 10.32614/CRAN.package.Rtapas |
Author: | Mar Llaberia-Robledillo
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Maintainer: | Mar Llaberia-Robledillo <mar.llaberia at uv.es> |
License: | MIT + file LICENSE |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | Rtapas results |
Reference manual: | Rtapas.pdf |
Package source: | Rtapas_1.2.tar.gz |
Windows binaries: | r-devel: Rtapas_1.2.zip, r-release: Rtapas_1.2.zip, r-oldrel: Rtapas_1.2.zip |
macOS binaries: | r-release (arm64): Rtapas_1.2.tgz, r-oldrel (arm64): Rtapas_1.2.tgz, r-release (x86_64): Rtapas_1.2.tgz, r-oldrel (x86_64): Rtapas_1.2.tgz |
Old sources: | Rtapas archive |
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These binaries (installable software) and packages are in development.
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